Contributor
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Affiliation
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Contribution
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Nirmal Bhagabati, John Braisted, Vasily Sharov, Wei Liang, Chun-Hua Wan, and Alexander I. Saeed
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The Institute for Genomic Research / Pathogen Functional Genomics Resource Center
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System design, module development and implementation, project coordination, documentation, optimization, usability assurance, user support, and Linear Expression Map (LEM) module development.
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Valentin Antonescu, Harold Gomez, Kristina Holton, Eleanor Howe, Sarita Nair, John Quackenbush, Dan Schlauch, Raktim Sinha, Razvan Sultana, Weidong Wang
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Dana-Farber Cancer Institute
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All changes in Version 4.3 - 4.6.
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Vu Chu, Annie Liu, Roger Bumgarner
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University of Washington
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Agilent data loader, USC, TEASE
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Raktim Sinha
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Dana Farber Cancer Institute
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Added aCGH type data loaders, aCGH visualizing modules and aCGH analysis
algorithms functionality to MeV based on a published open source tool &
article(Adam A. Margolin et al, Bioinformatics 2005)
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Alexander Sturn, Zlatko Trajanoski
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Institute of Biomedical Engineering, Graz University of Technology
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Initial system architecture and viewer design, initial module development (HCL, KMC, SOM, PCA, SVM)
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Tony Burnett
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European Bioinformatics Institute, Hinxton, UK
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MAGE-TAB Parser.
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Mark Snuffin, Aleksey Rezantsev, Dennis Popov, Alex Ryltsov, Edward Kostukovich, Igor Borisovsky
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DataNaut, Inc.
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System architecture, module architecture, parallel processing system, primary module development (RN, TRN)
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Tom Chittenden
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Dana-Farber Cancer Institute, Boston, MA, USA.
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nEASE algorithm development.
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Stu Golub, Zaigang Liu, Jane Ruan, Minhas Siddiqui
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Syntek Systems Corporation, Inc.
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Primary module development (CAST, FOM, GSH, GDM)
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Wei Liang
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The Institute for Genomic Research
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Normalization algorithm development, TM4 website maintenance
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Jerry Li, Vasily Sharov, Joe White, Mathangi Thiagarajan, Tracey Currier, Eleanor Howe
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The Institute for Genomic Research
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Additional development, software testing, documentation, support
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Patrick Cahan, Tim McCaffrey
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The George Washington University
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Affymetrix data loader and filters, Affymetrix loader rework, gene submission capability for
the LOLA cluster repository
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Todd Peterson
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National Center for Genome Resources
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GeneX-Lite to MeV connectivity
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Luke Somers
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Fox Chase Cancer Center
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QTC algorithm optimization and bug fix
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Jim Johnson, Ernest Retzel
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Center for Computational Genomics and Bioinformatics, University of Minnesota
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Java WebStart configuration, scripts and consultation to support using ANT technologies for MeV development
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Glynn Dennis, Douglas Hosack, Richard Lempicki, Wei Gao
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National Institute of Allergy and Infectious Disease, NIH, Laboratory of Immunopathogenesis and Bioinformatics.
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EASEOpenSource Java package to support EASE development and helpful consultation during EASE integration and development.
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Eric Albert
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Independent Development
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Implementation of BrowserLauncher.java, utility to launch default web browser from within MeV
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Sally Gaddis
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University of Texas, MD Anderson Cancer Center
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Report and basic testing of Java3D support for mev 3D viewers on the Mac platform.
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Stephen C. Harris
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FDA, National Center for Toxicological Research
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T-test bug identification, and suggestion for improvement of adjusted Bonferroni correction.
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Daniel Tenenbaum, Paul Shannon, Nitin Baliga
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Institute for Systems Biology, Seattle, WA
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Gaggle implementation, webstart improvements, general software engineering help.
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David Waring
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Fred Hutchinson Cancer Research Center, Seattle, WA
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Servlet-based file downloading support, webstart improvements.
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